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Lewis Martha

Title(s)Assistant Professor, Medicine
Phone(310) 825-7225
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    Other Positions
    Title(s)Assistant Professor, Infectious Diseases


    Collapse Research 
    Collapse Research Activities and Funding
    HIV-1 Nef's Role in Pathogenesis in vivo
    NIH/NIAID R01AI083083Jul 1, 2009 - Jun 30, 2014
    Role: Principal Investigator
    Factors/HIV-1 Nef's Ability to Direct Immune Evasion
    NIH/NIAID K08AI068449Mar 1, 2006 - Feb 28, 2010
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Altman DR, Sullivan MJ, Chacko KI, Balasubramanian D, Pak TR, Sause WE, Kumar K, Sebra R, Deikus G, Attie O, Rose H, Lewis M, Fulmer Y, Bashir A, Kasarskis A, Schadt EE, Richardson AR, Torres VJ, Shopsin B, van Bakel H. Genome Plasticity of agr-Defective Staphylococcus aureus during Clinical Infection. Infect Immun. 2018 Oct; 86(10). PMID: 30061376.
      View in: PubMed
    2. Al-Mawsawi LQ, Wu NC, De La Cruz J, Shi VC, Wu TT, Daar ES, Lewis MJ, Yang OO, Sun R. Short communication: HIV-1 gag genetic variation in a single acutely infected participant defined by high-resolution deep sequencing. AIDS Res Hum Retroviruses. 2014 Aug; 30(8):806-11. PMID: 24914638.
      View in: PubMed
    3. Wu NC, De La Cruz J, Al-Mawsawi LQ, Olson CA, Qi H, Luan HH, Nguyen N, Du Y, Le S, Wu TT, Li X, Lewis MJ, Yang OO, Sun R. HIV-1 quasispecies delineation by tag linkage deep sequencing. PLoS One. 2014; 9(5):e97505. PMID: 24842159.
      View in: PubMed
    4. De La Cruz J, Vollbrecht T, Frohnen P, Ng HL, Daar ES, Yang OO, Lewis MJ. Ineffectual targeting of HIV-1 Nef by cytotoxic T lymphocytes in acute infection results in no functional impairment or viremia reduction. J Virol. 2014 Jul; 88(14):7881-92. PMID: 24789790; PMCID: PMC4097801.
    5. Lewis MJ, Frohnen P, Ibarrondo FJ, Reed D, Iyer V, Ng HL, Elliott J, Yang OO, Anton P. HIV-1 Nef sequence and functional compartmentalization in the gut is not due to differential cytotoxic T lymphocyte selective pressure. PLoS One. 2013; 8(9):e75620. PMID: 24058696; PMCID: PMC3772905.
    6. Lassmann B, Arumugaswami V, Chew KW, Lewis MJ. A new system to measure and compare hepatitis C virus replication capacity using full-length, replication competent viruses. J Virol Methods. 2013 Dec; 194(1-2):82-8. PMID: 23973740.
      View in: PubMed
    7. Bhattacharya D, Lewis MJ, Lassmann B, Phan T, Knecht G, Bickel M, Yang OO. Combination of allele-specific detection techniques to quantify minority resistance variants in hepatitis B infection: a novel approach. J Virol Methods. 2013 Jun; 190(1-2):34-40. PMID: 23454647; PMCID: PMC3861565.
    8. Lewis MJ, Dagarag M, Khan B, Ali A, Yang OO. Partial escape of HIV-1 from cytotoxic T lymphocytes during chronic infection. J Virol. 2012 Jul; 86(13):7459-63. PMID: 22553321; PMCID: PMC3416319.
    9. Lewis MJ, Lee P, Ng HL, Yang OO. Immune selection in vitro reveals human immunodeficiency virus type 1 Nef sequence motifs important for its immune evasion function in vivo. J Virol. 2012 Jul; 86(13):7126-35. PMID: 22553319; PMCID: PMC3416312.
    10. Zuo J, Suen J, Wong A, Lewis M, Ayub A, Belzer M, Church J, Yang OO, Krogstad P. Functional analysis of HIV type 1 Nef gene variants from adolescent and adult survivors of perinatal infection. AIDS Res Hum Retroviruses. 2012 May; 28(5):486-92. PMID: 21861776; PMCID: PMC3332374.
    11. Yang OO, Lewis MJ, Reed EF, Gjertson DW, Kalilani-Phiri L, Mkandawire J, Helleringer S, Kohler HP. Human leukocyte antigen class I haplotypes of human immunodeficiency virus-1-infected persons on Likoma Island, Malawi. Hum Immunol. 2011 Oct; 72(10):877-80. PMID: 21663781; PMCID: PMC3175254.
    12. Maree CL, Eells SJ, Tan J, Bancroft EA, Malek M, Harawa NT, Lewis MJ, Santana E, Miller LG. Risk factors for infection and colonization with community-associated methicillin-resistant Staphylococcus aureus in the Los Angeles County jail: a case-control study. Clin Infect Dis. 2010 Dec 01; 51(11):1248-57. PMID: 21034197; PMCID: PMC3697429.
    13. Ali A, Realegeno S, Yang OO, Lewis MJ. Simultaneous assessment of CD4 and MHC-I downregulation by Nef primary isolates in the context of infection. J Virol Methods. 2009 Nov; 161(2):297-304. PMID: 19643141; PMCID: PMC2758048.
    14. Lewis MJ, Balamurugan A, Ohno A, Kilpatrick S, Ng HL, Yang OO. Functional adaptation of Nef to the immune milieu of HIV-1 infection in vivo. J Immunol. 2008 Mar 15; 180(6):4075-81. PMID: 18322217.
      View in: PubMed
    15. Balamurugan A, Lewis MJ, Kitchen CM, Robertson MN, Shiver JW, Daar ES, Pitt J, Ali A, Ng HL, Currier JS, Yang OO. Primary human immunodeficiency virus type 1 (HIV-1) infection during HIV-1 Gag vaccination. J Virol. 2008 Mar; 82(6):2784-91. PMID: 18199650; PMCID: PMC2259011.
    16. Salemi M, Fitch WM, Ciccozzi M, Ruiz-Alvarez MJ, Rezza G, Lewis MJ. Severe acute respiratory syndrome coronavirus sequence characteristics and evolutionary rate estimate from maximum likelihood analysis. J Virol. 2004 Feb; 78(3):1602-3. PMID: 14722315; PMCID: PMC321409.